PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma103g00230.1

Common Name

ZOSMA_103G00230

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 360aa MW: 41010.5 Da PI: 5.7722

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma103g00230.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.7	3.8e-52	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd++ k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk Zosma103g00230.1 11 VPPGFRFHPTEEELLTYYLRKKVASEKIDL-DVIREVDLNKLEPWDIQDKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATNAGFWKATGRDK 102 69**************************.9***********954444122455****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + + +g++ktLvfykgrap+g+k+dW+mheyrl Zosma103g00230.1 103 VIHT-SLKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 99.8999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-59	3	169	IPR003441	NAC domain
PROSITE profile	PS51005	56.686	11	169	IPR003441	NAC domain
Pfam	PF02365	4.7E-28	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009809	Biological Process	lignin biosynthetic process
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0009901	Biological Process	anther dehiscence
GO:0010047	Biological Process	fruit dehiscence
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MSSTGKGQSR VPPGFRFHPT EEELLTYYLR KKVASEKIDL DVIREVDLNK LEPWDIQDKC 60 KIGSTPQNDW YFFSHKDKKY PTGTRTNRAT NAGFWKATGR DKVIHTSLKR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD ENHDYSNVYI GQLIQCQEDG WVVCRVFKKK NYHKVLDHSP 180 MISTMPESDG LDQILQCMGR SCKRESGERK QDNNVVEKTN GNGYLNCMLP VDISNGNFHV 240 EVDADGGDEK TYSYKQQTAD ASTPHDWATL DRLVASHLNG QTDGFKQLTY SEDMNFNELP 300 YTASRLSINN PLIYSTSSGG LISCNDEDED DEDRNNEELD LWGTLTAGYC SQSGSEHLD*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MSSTGKGQSR VPPGFRFHPT EEELLTYYLR KKVASEKIDL DVIREVDLNK LEPWDIQDKC  60
KIGSTPQNDW YFFSHKDKKY PTGTRTNRAT NAGFWKATGR DKVIHTSLKR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD ENHDYSNVYI GQLIQCQEDG WVVCRVFKKK NYHKVLDHSP  180
MISTMPESDG LDQILQCMGR SCKRESGERK QDNNVVEKTN GNGYLNCMLP VDISNGNFHV  240
EVDADGGDEK TYSYKQQTAD ASTPHDWATL DRLVASHLNG QTDGFKQLTY SEDMNFNELP  300
YTASRLSINN PLIYSTSSGG LISCNDEDED DEDRNNEELD LWGTLTAGYC SQSGSEHLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	8	171	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	8	171	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	8	171	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	8	171	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	8	171	17	170	NAC domain-containing protein 19
3swm_B	2e-50	8	171	17	170	NAC domain-containing protein 19
3swm_C	2e-50	8	171	17	170	NAC domain-containing protein 19
3swm_D	2e-50	8	171	17	170	NAC domain-containing protein 19
3swp_A	2e-50	8	171	17	170	NAC domain-containing protein 19
3swp_B	2e-50	8	171	17	170	NAC domain-containing protein 19
3swp_C	2e-50	8	171	17	170	NAC domain-containing protein 19
3swp_D	2e-50	8	171	17	170	NAC domain-containing protein 19
4dul_A	2e-50	8	171	14	167	NAC domain-containing protein 19
4dul_B	2e-50	8	171	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00321	DAP	Transfer from AT2G46770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940850.1	1e-120	NAC domain-containing protein 43
Swissprot	Q84WP6	1e-110	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A0K9Q682	0.0	A0A0K9Q682_ZOSMR; NAC domain-containing protein 43
STRING	XP_008777853.1	1e-117	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1597	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-112	NAC family protein

Link Out ? help Back to Top
Phytozome	Zosma103g00230.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]