PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma105g00030.1

Common Name

ZOSMA_105G00030

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 775aa MW: 89362.7 Da PI: 8.5864

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma105g00030.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.8	1.3e-16	96	186	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y ++A + GF v+k ++++s ++ k+t+vCskeg+++ + +++ r+ ++rtgCka l +kk ++w++ k++ +HnHe+ Zosma105g00030.1 96 YYAFAGQKGFCVQKGSTRHS--KNCLRKKTYVCSKEGTSKAKVPVvenpanISTKPRHIRNSRTGCKALLSIKKV-GEQWMICKVNDDHNHEM 185 999**************9..45579*******999876677787766777788899********9.9*************9 PP FAR1 90 a 90 + Zosma105g00030.1 186 S 186 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-14	96	186	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.3E-29	308	399	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.619	582	620	IPR007527	Zinc finger, SWIM-type
Gene3D	G3DSA:4.10.60.10	9.9E-4	727	768	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence Send to blast
MEINKGLLLF KDMIEERPAN DNYSSLSMNN ECQRRESEEL QVGDINNNKT NLRTEGRDDQ 60 YGREDMYSTD VDSIRFIDLP KIGMTFDSLE EVEHTYYAFA GQKGFCVQKG STRHSKNCLR 120 KKTYVCSKEG TSKAKVPVVE NPANISTKPR HIRNSRTGCK ALLSIKKVGE QWMICKVNDD 180 HNHEMSALSN KRFLKINREI TPYARNLINR LEESNIPPSQ QYSYVAMQSG GFSSCSFTQS 240 DFSNYRRDDK ENMISHDVDI LIKKFQTLKE HDDDYYYSYE LDKEGCLKQL FWADPKCIEE 300 YKQYGEAITF DTTYNTNKYK LIIGIFCGVN NHMRTVLFAN GFLSNESTES FIWLFSEFKK 360 CMGNYPKTII TDQDAAMKTA ISSEFPTTFH RLCKWHITHK MCDKVGTVYR NKDEMERFNK 420 ILNTSENINE FEKNWSSWAT DNKLTENKWL KDMYTIRESW CPIYMTNHFF GGMQSTQRSE 480 GMNSLVKLNV KRSSTLFEFV CSLEVVLNAQ RNKLEELNHR DMDAPPLLIT QLQIEKCLLY 540 IYTTEVFLLY QQQVQKSVCY YIRGLPNEPN IHIVVGIYTQ IQSAKITCND LEDTPSCSCH 600 LFSSKAIPCR HIICFLTTTG RTSLPNDLIC DRWKKTENKS QTRAEGIQKP VGTALASIFN 660 RCARLIGNNV KIEDEIISKM NGILQEFEAL HSTGNRQSVS RSITRFEDKI TTMPLIGNPK 720 VAKTKGSGKN TGRPGKADPR FKSTREIKVK RPRCCKKCQQ QGHNARSCAV DYHK*

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence Send to blast

MEINKGLLLF KDMIEERPAN DNYSSLSMNN ECQRRESEEL QVGDINNNKT NLRTEGRDDQ  60
YGREDMYSTD VDSIRFIDLP KIGMTFDSLE EVEHTYYAFA GQKGFCVQKG STRHSKNCLR  120
KKTYVCSKEG TSKAKVPVVE NPANISTKPR HIRNSRTGCK ALLSIKKVGE QWMICKVNDD  180
HNHEMSALSN KRFLKINREI TPYARNLINR LEESNIPPSQ QYSYVAMQSG GFSSCSFTQS  240
DFSNYRRDDK ENMISHDVDI LIKKFQTLKE HDDDYYYSYE LDKEGCLKQL FWADPKCIEE  300
YKQYGEAITF DTTYNTNKYK LIIGIFCGVN NHMRTVLFAN GFLSNESTES FIWLFSEFKK  360
CMGNYPKTII TDQDAAMKTA ISSEFPTTFH RLCKWHITHK MCDKVGTVYR NKDEMERFNK  420
ILNTSENINE FEKNWSSWAT DNKLTENKWL KDMYTIRESW CPIYMTNHFF GGMQSTQRSE  480
GMNSLVKLNV KRSSTLFEFV CSLEVVLNAQ RNKLEELNHR DMDAPPLLIT QLQIEKCLLY  540
IYTTEVFLLY QQQVQKSVCY YIRGLPNEPN IHIVVGIYTQ IQSAKITCND LEDTPSCSCH  600
LFSSKAIPCR HIICFLTTTG RTSLPNDLIC DRWKKTENKS QTRAEGIQKP VGTALASIFN  660
RCARLIGNNV KIEDEIISKM NGILQEFEAL HSTGNRQSVS RSITRFEDKI TTMPLIGNPK  720
VAKTKGSGKN TGRPGKADPR FKSTREIKVK RPRCCKKCQQ QGHNARSCAV DYHK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q4I4	0.0	A0A0K9Q4I4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-96	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma105g00030.1