PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma105g00310.1

Common Name

ZOSMA_105G00310

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 247aa MW: 27930.2 Da PI: 7.0511

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma105g00310.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.1	3.5e-19	50	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Y +YA + GFsvrk ++++sk+ k+t+vCskeg ++ k ++ + r+ + rt+Cka + +k e ++w+++ ++ HnHe Zosma105g00310.1 50 LYYKYAGHKGFSVRKGSTRHSKK--GLRKKTYVCSKEGISRAIVPKiqnpleKSGRPRQIRNPRTNCKALMSLKIE-GDEWMISVFKDIHNHE 139 79****************944..37********998777777887666666778899********9.9************* PP FAR1 89 la 90 ++ Zosma105g00310.1 140 MS 141 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-17	50	141	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MKLFATYIDY CDATTEMCGE EEDNMQTPSR ECEEPKVGMK FTTIGEVEEL YYKYAGHKGF 60 SVRKGSTRHS KKGLRKKTYV CSKEGISRAI VPKIQNPLEK SGRPRQIRNP RTNCKALMSL 120 KIEGDEWMIS VFKDIHNHEM STPSLKSSEE DVEDIDDNDP DRFYSHLIFI PQITVCLLVF 180 NLLIQLKWNV HVCSSMFTLS VTGIPQYIGW VYLLDTCSLK KEIILERPGV AGTSLGLDNK 240 ICATAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q4W2	0.0	A0A0K9Q4W2_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	2e-11	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Zosma105g00310.1