PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma106g00250.1
Common NameZOSMA_106G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 229aa    MW: 25330.7 Da    PI: 9.8587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma106g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19133183255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdps+ g  +r++lg+f t eeAa a+++a+ +++g
  Zosma106g00250.1 133 HYRGVRQRP-WGKFAAEIRDPSKKG--ARVWLGTFKTSEEAALAYDRAAFRMRG 183
                       7********.**********97744..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-32132191IPR001471AP2/ERF domain
CDDcd000188.55E-34133191No hitNo description
SuperFamilySSF541714.9E-23133193IPR016177DNA-binding domain
SMARTSM003806.7E-39133197IPR001471AP2/ERF domain
PROSITE profilePS5103224.171133191IPR001471AP2/ERF domain
PfamPF008471.6E-14133183IPR001471AP2/ERF domain
PRINTSPR003671.0E-10134145IPR001471AP2/ERF domain
PRINTSPR003671.0E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAAKISETDM VPVDSMRQQH LIEESSSSCF DKKKVPQERI TTAQFPTSRS SSFASLLSDE  60
WGDLPLQFND SDDMVVYGIL HDAVSAGWVP SLFSNLNNSP PVSVKMEAGD DVELVKEVTT  120
TISPPVKPVK VRHYRGVRQR PWGKFAAEIR DPSKKGARVW LGTFKTSEEA ALAYDRAAFR  180
MRGSRALLNF PLRITSNMEY HSDSASTRVK RKKASPPVPF KTCSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-37130196268ATERF1
3gcc_A7e-37130196268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
UniProtInvolved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
UniProtINDUCTION: Strong induction by ethylene and by wounding. {ECO:0000269|PubMed:12935902}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639097.14e-63ethylene-responsive transcription factor 2-like
SwissprotO803373e-58EF100_ARATH; Ethylene-responsive transcription factor 1A
SwissprotQ84XB32e-58ERF1_SOLLC; Ethylene-responsive transcription factor 1
TrEMBLA0A0K9Q6231e-167A0A0K9Q623_ZOSMR; Ethylene-responsive transcription factor 1A
STRINGcassava4.1_022027m4e-61(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-58ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]