PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma106g00760.1
Common NameZOSMA_106G00760
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 338aa    MW: 37419.8 Da    PI: 4.3494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma106g00760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16140189255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++ GVr++  +gr+ AeIrdp+    ++r +lg+f taeeAa+ ++ a+ +l+g
  Zosma106g00760.1 140 KFIGVRRRQ-WGRYSAEIRDPVG---KTRRWLGTFNTAEEAARNYDMAAIELRG 189
                       789***887.**********643...5999**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-31140203IPR001471AP2/ERF domain
PROSITE profilePS5103222.142140197IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-20140198IPR016177DNA-binding domain
PfamPF008474.6E-10140189IPR001471AP2/ERF domain
CDDcd000188.16E-30140199No hitNo description
Gene3DG3DSA:3.30.730.109.7E-27140197IPR001471AP2/ERF domain
PRINTSPR003679.6E-7141152IPR001471AP2/ERF domain
PRINTSPR003679.6E-7163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMEWVSKMDE DKSFYIPPTK YTFHRNVTTK YTSSIDAGVL EPAGRRSVVF SYTDLDATDS  60
SSDEEECGFN GGGPRQQRVK RYIHQIIVEP FSNAATAVVG SCPPPVGETG NEKKKRMVKS  120
KAKTKVKNDV AMSISTEPRK FIGVRRRQWG RYSAEIRDPV GKTRRWLGTF NTAEEAARNY  180
DMAAIELRGP DAVTNFPIVG LNTSTTSESS DDCNITQSSP TSVLCYDNPK QEPVPEQEPP  240
VPEPQPETAI ESEMVMENFG FMDFGDLCMP LDIPLFDDFM DFDHPMFFEK TLETTTCAAM  300
DGNTGGFDGD DGFGGLVDFS DSLLDDLLRS DPTFCVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-17133197772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q6420.0A0A0K9Q642_ZOSMR; Putative Ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-38cytokinin response factor 4