PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma107g00040.1
Common NameZOSMA_107G00040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 460aa    MW: 49816.8 Da    PI: 7.3644
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma107g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-1758118257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+++++eq+++Le+ F++   +p ++e++++  +l    ++ +++V++WFqNr+ + k+
  Zosma107g00040.1  58 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRVQLqeygQVGDANVFYWFQNRKSRSKH 118
                       89*****************99*************************************995 PP
2Wus_type_Homeobox111.35.2e-3657120265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei+ri+ +L+eyG+++d+NVfyWFQNrk+R+++kq
   Zosma107g00040.1  57 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRVQLQEYGQVGDANVFYWFQNRKSRSKHKQ 120
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.20354119IPR001356Homeobox domain
SuperFamilySSF466895.99E-1255124IPR009057Homeodomain-like
SMARTSM003891.1E-856123IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-757125IPR009057Homeodomain-like
CDDcd000863.55E-857119No hitNo description
PfamPF000466.2E-1558118IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MASSNRHWPS LFKSKPCNAH HQWQHDINHA SLLSNPCQKP PFASPGGEGA EERTPEPKPR  60
WNPKPEQIRI LEAIFNSGMV NPPRDEIRRI RVQLQEYGQV GDANVFYWFQ NRKSRSKHKQ  120
RQLQSRQHQQ QQQTRPTSNV ISVTTASSSS SSSDPSNSSG CSDKTLTSLS SKTTSITGTA  180
GGGMMELSNN SPTASVNQTY FTPGELPLDQ FFFHAHAHAQ AQAQAQAQAH AQAQGYNCNI  240
SPADLSLSSL VAAEQQGNLG LRSGFWSELM MTQPQPAESG CKNISAVLDG DYHLVMDETK  300
GKMHHHHHQQ FHSNNIYGSP APIATAPIIT AASILQPPPS PTPQAPQPQP QPPPPPPAVT  360
ATTTTTTGAT KDASLLLSAP ISEMLQGIGV PTMVVFINDE AYEVGVGPLN VKLAFGLDAV  420
LFHSSGLPVL VDDWGVTLHP LQNGASYYVL FPLLLFFKV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3Z00.0A0A0K9Q3Z0_ZOSMR; WUSCHEL-related homeobox
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.19e-50homeobox-3