PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma107g00630.1
Common NameZOSMA_107G00630
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 254aa    MW: 28810.4 Da    PI: 7.8673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma107g00630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd  lv +v+++G+g+W+ ++   g+ R+ k+c++rw +yl
  Zosma107g00630.1 14 KGPWTPEEDITLVSYVQEHGPGNWRCVPTNTGLMRCSKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding50.83.9e-1667109145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       rg++T++E+++++++ ++lG++ W++Ia++++  Rt++++k++w+
  Zosma107g00630.1  67 RGNFTPQEEQKIIRLQTLLGNK-WAAIASHLP-QRTDNDIKNFWN 109
                       89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.681961IPR017930Myb domain
SuperFamilySSF466894.12E-3012108IPR009057Homeodomain-like
SMARTSM007172.3E-111363IPR001005SANT/Myb domain
PfamPF002492.9E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-241568IPR009057Homeodomain-like
CDDcd001675.32E-101661No hitNo description
PROSITE profilePS5129424.72462116IPR017930Myb domain
SMARTSM007171.8E-1466114IPR001005SANT/Myb domain
PfamPF002492.4E-1467109IPR001005SANT/Myb domain
CDDcd001673.98E-1069112No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRPPFNDQI CIKKGPWTPE EDITLVSYVQ EHGPGNWRCV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPQEEQKIIR LQTLLGNKWA AIASHLPQRT DNDIKNFWNI HLKKKLLRTN  120
MESAGNNCRI ELTDSLSSID NIHSPLLGKD STTTPKPTIA ASNGPSSMYV LSTENISQLL  180
KTWKRSPHDT KSSSSSNADF NDINKNTHDG NKERHIDYSH LESILPFDPN LEEDFSTRWN  240
TAELEMEIDG VFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-23141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-23141164105C-Myb DNA-Binding Domain
1msf_C1e-23141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431144.13e-77myb-related protein 306
RefseqXP_020087041.13e-77myb-related protein 306-like
SwissprotB3VTV73e-75MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A0K9Q5Z50.0A0A0K9Q5Z5_ZOSMR; Uncharacterized protein
STRINGLus100095221e-77(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.14e-76myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]