PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma109g00050.1
Common NameZOSMA_109G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 393aa    MW: 43693.5 Da    PI: 9.2143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma109g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-05119141123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  Zosma109g00050.1 119 FVCEICNKGFQRDQNLQLHRRGH 141
                       89*******************88 PP
2zf-C2H2120.00063196218123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +   s+ k H +t+
  Zosma109g00050.1 196 WKCDKCSKKYAVMSDWKAHAKTC 218
                       58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.91E-7118141No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5118141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949119141IPR007087Zinc finger, C2H2
PfamPF121715.9E-5119141IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017119141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
SMARTSM00355210161191IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-4184217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.91E-7191216No hitNo description
SMARTSM00355200196216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSMSMTMSMS NSTTASLSEE TSGGGVIGST TTFSPRTTDD RELYRFNPLQ FRPIISSSCQ  60
HDDIDLHHHY HHHHQQQQQQ QQQQQQKVIK KKRNLPGNPD PDAEVVALSP KTLMATNRFV  120
CEICNKGFQR DQNLQLHRRG HNLPWKLRQK NSKEIVRKRV YICPEPTCVH NHPSRALGDL  180
TGIKKHFCRK HGEKVWKCDK CSKKYAVMSD WKAHAKTCGT REYKCDCGTL FSRKDSFVTH  240
RAFCDALAEE SARIAAVTAG ASGVSGNFLP LPPLPPPPLS QELLSFPWNQ FSKPNSPPQA  300
PPQQAHLSAT ELLQKATTMG FITTTVNAIY AGLDMGGGSL STRNFLGGGS RVVECPMAAE  360
EADPMFLSGL DLANNNNKHG INGFLSQQQW RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-36192258369Zinc finger protein JACKDAW
5b3h_F8e-36192258369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038657.11e-118PREDICTED: protein indeterminate-domain 12
SwissprotO227591e-110IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0K9Q5U00.0A0A0K9Q5U0_ZOSMR; Uncharacterized protein
STRINGXP_010038657.11e-117(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-110indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]