PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma109g00090.1
Common NameZOSMA_109G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 405aa    MW: 45831.5 Da    PI: 6.8011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma109g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05134157123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y+C+ Cg+ ++++ +Lk+H r  H
  Zosma109g00090.1 134 YVCGVCGRKCKTNLDLKKHFRQlH 157
                       9******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.5E-854112IPR029060PIN domain-like
SMARTSM003550.0092134157IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866134162IPR007087Zinc finger, C2H2
PROSITE patternPS000280136157IPR007087Zinc finger, C2H2
CDDcd061671.83E-12148288No hitNo description
Gene3DG3DSA:3.40.50.10105.5E-8209278IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MVSTVLSFPS FFTTCVVPKP NPKSNILKLP ITKASNADEI DMVQSVNGVW SAKSDEKVVV  60
LWDLDNKPPR GPPYDAGMAL RNLASLFGTV LDVAAYANRH AFSHVPRRII HQRKERREMD  120
ILERRGVNIP EQPYVCGVCG RKCKTNLDLK KHFRQLHERE RNKKLARMRM LKGKKRKKYR  180
ERFVSGNTKY EDAARDLITP KTGYGLAKEL RRAGIYVRTV EDKPQAADAA LKRQMLHSMG  240
NGVDWLFLVS DDSDFTEMMW KARESSVRTV VVGDWRNSLG RQADLWVPWN GVEAGDVAEE  300
IHKSGPNFRT DLSGRTHDLF SIAEDDYDDW SNSSVDSVVD KILGRDDGKS SDGGGRLRIS  360
QFSEEESHGG RLDDDDLRLY GSSLPGDDFL WESETDEDED YESS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173177KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925216.11e-148uncharacterized protein LOC105047798
RefseqXP_010925295.11e-148uncharacterized protein LOC105047798
RefseqXP_010925443.11e-148uncharacterized protein LOC105047798
RefseqXP_010925523.11e-148uncharacterized protein LOC105047798
RefseqXP_010925661.11e-148uncharacterized protein LOC105047798
RefseqXP_010925888.11e-148uncharacterized protein LOC105047798
RefseqXP_019701761.11e-148uncharacterized protein LOC105047798
RefseqXP_029118851.11e-148uncharacterized protein LOC105047798
RefseqXP_029118853.11e-148uncharacterized protein LOC105047798
RefseqXP_029118855.11e-148uncharacterized protein LOC105047798
RefseqXP_029118856.11e-148uncharacterized protein LOC105047798
RefseqXP_029118861.11e-148uncharacterized protein LOC105047798
TrEMBLA0A0K9Q4130.0A0A0K9Q413_ZOSMR; Zinc finger, C2H2 type family protein
STRINGXP_008776526.11e-145(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-116C2H2-like zinc finger protein