PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma109g00470.1

Common Name

ZOSMA_109G00470

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 186aa MW: 20771.7 Da PI: 10.2387

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma109g00470.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.8	5.7e-16	60	152	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+ +GF vr ++k+ + ++ +++++ Csk+g+++ t+ +rr++ ++r+gC a++k k+ + +++w+ ++++ +HnH+l+ Zosma109g00470.1 60 YYDFASAMGFFVRLGSTKNIldkeSGQKILIMKRLLCSKQGSSSLLFPPTNGTRRKNGVSRCGCPASIKFKRIDrSDHWVTDTINFDHNHPLT 152 999********999876666445666789*********9999999******************99**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-13	60	152	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSYGTAKTPN NQFKRKSSSP GQYPTSPDYE NGCFSYSQSN KPCPIICQDF PSFEMVVQSY 60 YDFASAMGFF VRLGSTKNIL DKESGQKILI MKRLLCSKQG SSSLLFPPTN GTRRKNGVSR 120 CGCPASIKFK RIDRSDHWVT DTINFDHNHP LTIPSKIRYF PINRSISQTS RLLFASLGKV 180 NVSVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC256211	7e-89	AC256211.1 Zostera marina clone XTP08-D02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q3T5	1e-134	A0A0K9Q3T5_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	3e-12	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Zosma109g00470.1