PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma10g00270.1
Common NameZOSMA_10G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 184aa    MW: 20441.4 Da    PI: 8.5993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma10g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-1756105255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++  g+W+AeIrdp+    +  r++lg+f t+e+Aa a+++a+ +++g
  Zosma10g00270.1  56 RYRGIRQRS-YGKWAAEIRDPV----KgVRVWLGTFTTPEKAACAYDQAAVRIRG 105
                      7*****999.8*********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-3556119IPR001471AP2/ERF domain
CDDcd000181.10E-2756114No hitNo description
Gene3DG3DSA:3.30.730.104.1E-3056113IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2156114IPR016177DNA-binding domain
PROSITE profilePS5103222.56356113IPR001471AP2/ERF domain
PRINTSPR003673.1E-125768IPR001471AP2/ERF domain
PRINTSPR003673.1E-1295115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MCGGAVLSDL LSTQSVVFFN TDVACRQAAN KVGVGEGDCR RKGFRRLAAV KKKKNRYRGI  60
RQRSYGKWAA EIRDPVKGVR VWLGTFTTPE KAACAYDQAA VRIRGKKAKL NFPIKENEEL  120
SLVSPPSPSP LSLLLVDDLV EIEGYTKFMI DDQMSSPLLE YTDDDYTDNS MQDAPLPLWN  180
FDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2253117267ATERF1
3gcc_A1e-2253117267ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13953RRKGFRRLAAVKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3L01e-133A0A0K9Q3L0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-34ERF family protein