PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma10g00440.1
Common NameZOSMA_10G00440
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Dof
Protein Properties Length: 313aa    MW: 34028.9 Da    PI: 7.1763
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma10g00440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof109.41.7e-3459116360
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                      ++ l+cprC+s+ntkfCyynnys  qPr++Ck+C+ryWtkGG +rnvP+Gg +rk k 
  Zosma10g00440.1  59 TEPLHCPRCNSKNTKFCYYNNYSSLQPRHYCKTCKRYWTKGGVIRNVPIGGRSRKPKL 116
                      57899**************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.4E-3061115IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-2062109IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.63662116IPR003851Zinc finger, Dof-type
PROSITE patternPS01361064100IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAEQQQLDSK LSDQPTTDHE NGDYLQPEII STPTSQVEET HVTPNPSVVS PPPPPPPTTE  60
PLHCPRCNSK NTKFCYYNNY SSLQPRHYCK TCKRYWTKGG VIRNVPIGGR SRKPKLSRLN  120
SSSSVSFSTV RGMTIPTNFP PPSLSLSPAQ PDHQFQLHQQ YWFMNNANAG GILGGNDGSG  180
YMRGLQLPPI PMIHPYANHG NLHHQMSSMG PNHEHLINYH PTTVVEEGSF PVQVPAPFMM  240
AGGRNASGFL ESSMMMGGFG SSSAINSDTI PYNWPPINAD VNQISSSAMT SPTFSTTTAA  300
ATRVGESEES NG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3D40.0A0A0K9Q3D4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.13e-25OBF-binding protein 3