PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma110g00110.1
Common NameZOSMA_110G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 174aa    MW: 19273.9 Da    PI: 9.9629
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma110g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.81.9e-09102173370
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 
                       Y  Y +++ Fsvr  +++++    + ++  ++r++ Cskeg+    +  +  +rr++a +r+gC a++k+k+
  Zosma110g00110.1 102 YYGYTSKMSFSVRLGSTNYKtskdDGKKILVMRRLLCSKEGTVGLLHPPKLGKRRNNAISRCGCCASIKIKR 173
                       899**********9876655453333445689**********9998888899*****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-6102173IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKPMVMYNVQ KINDFPVMPN ANYVSHHNHD TSLDNLRSPI SSENNDLTGQ LNTITSSVNA  60
SPSFFVPKQP TDTNSSLDNV KLNSPPTVGQ FYSSYSDVLD QYYGYTSKMS FSVRLGSTNY  120
KTSKDDGKKI LVMRRLLCSK EGTVGLLHPP KLGKRRNNAI SRCGCCASIK IKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155PKLGKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3G61e-124A0A0K9Q3G6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-08FAR1-related sequence 11