PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma110g00340.1
Common NameZOSMA_110G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 198aa    MW: 22463.7 Da    PI: 9.501
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma110g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-05681081055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR++i ++  eL +l+P        +++  e+L    +YIk Lq
  Zosma110g00340.1  68 RQRRRKISNKTKELEKLIPGE-----HRMTTGEMLLSMAKYIKFLQ 108
                       9*******************7.....59****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.44258107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-963123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-564113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-964131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-567111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHDFHDRACV PPVDQFYYNA GNEPTTNAFA DEPNGSLNFS AAQPEFFHVG SNMNPEGLSM  60
TIQSVTARQR RRKISNKTKE LEKLIPGEHR MTTGEMLLSM AKYIKFLQAE VGMLCLMKQQ  120
NQSHNPTQRR IQQLVMSTDV QEKLYRANKC IVSKQIVDNL RNDPFFFSHT SSISRDFVMF  180
MKSLKPPSPP PPPPTSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088160.17e-28transcription factor bHLH53-like
TrEMBLA0A0K9Q3741e-146A0A0K9Q374_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.17e-18bHLH family protein