PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma112g00340.1
Common NameZOSMA_112G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YB
Protein Properties Length: 203aa    MW: 22196.8 Da    PI: 7.6306
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma112g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.62.7e-5621117197
             NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       vreqdrflPian+srimkk+lP n+ki+kdaketvqecvsefisf+tseasdkc rekrktingddllw++atlGfedy+eplkvyl+k+re+
  Zosma112g00340.1  21 VREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCLREKRKTINGDDLLWSMATLGFEDYIEPLKVYLQKHREM 113
                       69******************************************************************************************* PP

             NF-YB  94 egek 97 
                       eg++
  Zosma112g00340.1 114 EGDS 117
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-5418146IPR009072Histone-fold
SuperFamilySSF471135.39E-4024142IPR009072Histone-fold
PfamPF008081.1E-262791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-215573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-217492No hitNo description
PRINTSPR006151.9E-2193111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MADVPRSPDS GGDQSPRATN VREQDRFLPI ANISRIMKKA LPPNGKIAKD AKETVQECVS  60
EFISFITSEA SDKCLREKRK TINGDDLLWS MATLGFEDYI EPLKVYLQKH REMEGDSKGS  120
SKRDTGNSSG STIQVVPQAT SFMHSQTAID AQHTSLSRSQ AAVNTQQSSL SRIQQQGQQA  180
DHNHLMIPVQ LGVPNSSNGI NQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4720112193NF-YB
4awl_B1e-4720112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4720112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020696444.15e-75nuclear transcription factor Y subunit B-1-like
SwissprotQ67XJ22e-70NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
SwissprotQ8VYK42e-70NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0K9Q3861e-149A0A0K9Q386_ZOSMR; Nuclear transcription factor Y subunit B-10
STRINGXP_010529728.16e-73(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.38e-73nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]