PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma112g00390.1

Common Name

ZOSMA_112G00390

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 200aa MW: 22112 Da PI: 8.5637

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma112g00390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.5	4.1e-40	14	73	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++lkcprCds ntkfCyynnyslsqPryfCkaCrryWt+GG+lrn+P+Ggg+rknk+ s Zosma112g00390.1 14 ADQLKCPRCDSINTKFCYYNNYSLSQPRYFCKACRRYWTHGGSLRNIPIGGGCRKNKRFS 73 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	8	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-34	16	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MKMETAKKVG KQQADQLKCP RCDSINTKFC YYNNYSLSQP RYFCKACRRY WTHGGSLRNI 60 PIGGGCRKNK RFSSSSSSSK KFLAHQTAHL GLSSLLEISN VNANNMSVST AGLPTFFDLL 120 MGGFLESSNN NNNYTAGIPD WYPLVQQEQQ QQQLVSPFEA MPAAAIDEEI WRNVTMEGGS 180 LDLLGRDCCI GSSLHSLFG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007210227.1	4e-36	dof zinc finger protein DOF5.6
Refseq	XP_021825960.1	4e-36	dof zinc finger protein DOF5.6
Swissprot	O24463	6e-35	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	A0A0K9Q301	1e-148	A0A0K9Q301_ZOSMR; Dof zinc finger protein DOF1.7
STRING	EMJ11426	2e-35	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Zosma112g00390.1

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]