PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma114g00360.1

Common Name

ZOSMA_114G00360

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 234aa MW: 26082 Da PI: 6.3624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma114g00360.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.7e-09	123	171	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq Zosma114g00360.1 123 NSHSLAERLRREKISERMRFLQNLVPGC----NKITGKAVMLDEIINYVQSLQ 171 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.11E-10	118	175	No hit	No description
SuperFamily	SSF47459	2.22E-17	118	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.161	120	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-17	120	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-7	123	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-8	126	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MARTFSDLSS DGAASINPPT PMVSRQFSFN HLDLQNAASY DVGFLDYITS YSVSEVGGAS 60 SAIANSDDDG RDFGGRKRKK NLDFFQNHSN KKEAKLREPQ TMENSSSKEE YIHMRAKRGQ 120 ATNSHSLAER LRREKISERM RFLQNLVPGC NKITGKAVML DEIINYVQSL QSQVEFLSMK 180 LSTVNPEPNQ MLTNDIVVQT SLGSNPDHLN YGIIAQNYGS SLWDDDLQNV VFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	79	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939355.1	1e-49	transcription factor bHLH74 isoform X3
Swissprot	Q6NKN9	1e-45	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A0K9Q2L4	1e-173	A0A0K9Q2L4_ZOSMR; Uncharacterized protein
STRING	XP_008785728.1	2e-46	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6033	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	5e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma114g00360.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]