PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma114g00510.1
Common NameZOSMA_114G00510
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 232aa    MW: 26483.6 Da    PI: 7.3951
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma114g00510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-20666257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+++t+eql +Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Zosma114g00510.1  6 STRWCPTPEQLMILEEMYRSgIRTPNASQIQQITAHLsyygKIEGKNVFYWFQNHKARDRQ 66
                      58*****************99*************************************996 PP
2Wus_type_Homeobox122.41.8e-39567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
   Zosma114g00510.1  5 PSTRWCPTPEQLMILEEMYRSGIRTPNASQIQQITAHLSYYGKIEGKNVFYWFQNHKARDRQK 67
                       589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.317267IPR001356Homeobox domain
SMARTSM003893.6E-5471IPR001356Homeobox domain
CDDcd000861.07E-4568No hitNo description
PfamPF000462.4E-18666IPR001356Homeobox domain
SuperFamilySSF466891.41E-11767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-7866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MPQAPSTRWC PTPEQLMILE EMYRSGIRTP NASQIQQITA HLSYYGKIEG KNVFYWFQNH  60
KARDRQKMRI RRPSRHHHLL QSQQQSHQIN ANEQTITTSA THPQFFQMEI SQPSAHHQPP  120
HFQFTHQGDP CLQENNPAVM NLVCKLEASE TKEGDEQMAR SSMESTNHVP RNEWVTMMEM  180
GSTSTALTVV DPPFSRELKT LDLFPTNSTG LKGEEYYCST SKSSTSTSTT N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269|PubMed:15169755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783634.11e-60WUSCHEL-related homeobox 3B-like
RefseqXP_018684347.11e-60PREDICTED: WUSCHEL-related homeobox 3B-like
SwissprotQ70UV17e-43WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBLA0A0K9Q2N01e-174A0A0K9Q2N0_ZOSMR; WUSCHEL-related homeobox 3B
STRINGGSMUA_Achr7P18230_0012e-60(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-40WOX family protein
Publications ? help Back to Top
  1. Scanlon MJ
    NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development.
    Development, 2000. 127(21): p. 4573-85
    [PMID:11023861]