PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma114g00860.1

Common Name

ZOSMA_114G00860

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 139aa MW: 15315.6 Da PI: 10.2127

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma114g00860.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.5e-08	24	64	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +f L+ l+P K++ +++L +Av+Y+k L Zosma114g00860.1 24 ARERRHRISAKFKILQGLVPGG-----SKMDTVSMLDEAVNYVKFL 64 699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.684	15	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-13	20	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.56E-12	21	68	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.3E-11	21	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-11	21	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-6	24	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MCTTKRSKRR GGSKLSTDPQ SVAARERRHR ISAKFKILQG LVPGGSKMDT VSMLDEAVNY 60 VKFLKKQIWF HQSILITNIA NTQLPPPPSS LPALFGFPTS SGLDITNYSL PPLPSTVYSG 120 SFLPEDYYND GYLPSSYK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010495035.1	1e-35	PREDICTED: transcription factor bHLH140-like
Swissprot	Q9M041	2e-31	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A0K9Q2R8	7e-97	A0A0K9Q2R8_ZOSMR; Uncharacterized protein
STRING	XP_010495035.1	4e-35	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8553	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	2e-32	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Zosma114g00860.1

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]