PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma115g00150.1
Common NameZOSMA_115G00150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 230aa    MW: 27155.3 Da    PI: 10.1051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma115g00150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-17449147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg W + Ede+l+++v+++G+++W+ Iar +  gR++k+c++rw++ 
  Zosma115g00150.1  4 RGHWRPSEDEKLKELVNKHGPHNWNGIARNLH-GRSGKSCRLRWFNQ 49
                      899*****************************.***********996 PP
2Myb_DNA-binding551.9e-175698145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      r ++T+eE+e+l++ ++ +G++ W+ Iar +  gRt++ +k++w+
  Zosma115g00150.1 56 RSPFTEEEEERLIESHRIHGNR-WSVIARLFK-GRTDNAVKNHWH 98
                      789*******************.********9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.808154IPR017930Myb domain
SMARTSM007179.5E-15352IPR001005SANT/Myb domain
SuperFamilySSF466892.1E-29497IPR009057Homeodomain-like
PfamPF002499.8E-17449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-27557IPR009057Homeodomain-like
CDDcd001679.24E-13748No hitNo description
SMARTSM007171.5E-1455103IPR001005SANT/Myb domain
PROSITE profilePS5129419.01155105IPR017930Myb domain
PfamPF002491.5E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-205899IPR009057Homeodomain-like
CDDcd001676.46E-65898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MCTRGHWRPS EDEKLKELVN KHGPHNWNGI ARNLHGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEERLIES HRIHGNRWSV IARLFKGRTD NAVKNHWHVI EARRSRERTR FLCKMRKTVD  120
HHRPMSEKIL NCPKQPSTTA QFFFTHPHHH HRRHPFYFGI KTPESDENSS ADRNSIRFHD  180
FLRLNNEDEE GGRESEGKWI GKKVDTMEES DKAAGTSRDF IDFMAESNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3021045107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276273.16e-73PREDICTED: transcriptional activator Myb-like
SwissprotQ6R0C42e-64MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A0K9Q2F21e-169A0A0K9Q2F2_ZOSMR; Uncharacterized protein
STRINGXP_010276273.12e-72(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-61myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]