PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma116g00050.1
Common NameZOSMA_116G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 329aa    MW: 35757.8 Da    PI: 9.2738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma116g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-063052123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Zosma116g00050.1 30 FVCEICNKGFQRDQNLQLHRRGH 52
                      89*******************88 PP
2zf-C2H212.70.00038106128123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C +C+k +  +s+ k H +t+
  Zosma116g00050.1 106 WRCDKCSKKYAVQSDWKAHSKTC 128
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-52952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-62952No hitNo description
PROSITE profilePS5015710.9493052IPR007087Zinc finger, C2H2
PfamPF121714.7E-53052IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0173052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035523071101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.00194127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-6101126No hitNo description
SMARTSM00355160106126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MCIYILCVYV DPNAEVIALS PKTLMTRNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  60
RTNSEVRKKV YICPEPSCVH HNPNRALGDL TGIKKHFCRK HGEKKWRCDK CSKKYAVQSD  120
WKAHSKTCST REYKCDCGII FSRRDCFITH RAFCNVLAEE SDKLKQQLLS SLSSSGAGVL  180
RTNSIAVESS SSSTAVTTSS HGSMMMPVMT THPMFSTIMS TGSGSRCTTS ATALLQKATQ  240
MGAMTSSSVD NACHFGNGYR TMSASAQVMG FMGGADLFDE SGGGFDHDEL NQMGIRGRYG  300
IAGGGGGGGS GGVAGGDTLT VDFLGRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-30102175371Zinc finger protein JACKDAW
5b3h_F2e-30102175371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15668KLRQRTNSEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021282713.11e-111protein indeterminate-domain 2-like
SwissprotQ9SCQ62e-99IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0K9Q4960.0A0A0K9Q496_ZOSMR; Zinc finger protein
STRINGGorai.007G298600.11e-109(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-100indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]