PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma116g00290.1
Common NameZOSMA_116G00290
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family YABBY
Protein Properties Length: 194aa    MW: 21575.7 Da    PI: 9.8865
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma116g00290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY208.62.2e-6471646168
             YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                        +e+vCyv+CnfCntilavsvP +++f++vtvrCGhC++llsvnl  + +         ++ k  +  + +  +++  +   +++s+   ++ 
  Zosma116g00290.1   7 PAEHVCYVNCNFCNTILAVSVPCNTMFNIVTVRCGHCANLLSVNLGGTLHPNVGIPY--NQSKSLQNGNIRGLDRHGIMECGSSSSS---RKC 94 
                       689*******************************************99988777765..2333333333333333322222222222...222 PP

             YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                       +k+ + ++ + +  p +  PPekrqrvPsaynrfik eiqrik++nPdishreafsaa+knWahfP+ih 
  Zosma116g00290.1  95 NKIASVKNMNKQFLPSIHPPPEKRQRVPSAYNRFIKAEIQRIKSNNPDISHREAFSAASKNWAHFPRIHL 164
                       2332222222233466778**************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-657164IPR006780YABBY protein
SuperFamilySSF470958.9E-8109159IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.0E-4115160IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSLEAVPAEH VCYVNCNFCN TILAVSVPCN TMFNIVTVRC GHCANLLSVN LGGTLHPNVG  60
IPYNQSKSLQ NGNIRGLDRH GIMECGSSSS SRKCNKIASV KNMNKQFLPS IHPPPEKRQR  120
VPSAYNRFIK AEIQRIKSNN PDISHREAFS AASKNWAHFP RIHLNHNMEA DKEMRHGDEV  180
IAGGRRDPKL RHN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247851.11e-63PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ2QM172e-58YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0K9Q1Z11e-141A0A0K9Q1Z1_ZOSMR; Protein YABBY 6
STRINGXP_010247851.15e-63(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-58YABBY family protein