PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma116g00640.1
Common NameZOSMA_116G00640
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 252aa    MW: 29135 Da    PI: 8.8968
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma116g00640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.26.9e-2130113286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W+++e+ +Li a+++m+ +lrrg lk ++W+ev++ + ++ g+ +r+ +qC++k+e+l+kry+ ++   ++   +s+s ++++dq+e
  Zosma116g00640.1  30 WSEHETSHLIGAYQDMWYSLRRGPLKSHQWDEVAASLsSRCGYgSRTGTQCRHKMEKLRKRYRIERGKLSS---NSRSYWVHYDQME 113
                       *************************************7667888********************9999987...56779*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1928113No hitNo description
Gene3DG3DSA:1.10.10.605.3E-42884IPR009057Homeodomain-like
PROSITE profilePS500906.763088IPR017877Myb-like domain
SMARTSM005954.9E-537120IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MASSSDPQHP VSTLNPVPRP KKNSPPGQAW SEHETSHLIG AYQDMWYSLR RGPLKSHQWD  60
EVAASLSSRC GYGSRTGTQC RHKMEKLRKR YRIERGKLSS NSRSYWVHYD QMELMESGPH  120
PISVCPPVIP VCPPKAQVEV FDNEDEEDDE NESEEDMIRT KERVAWKSNN VDCNYESVRA  180
AKKLVSVVKR FAEGLYRIEK RKMDMMTELE RDWMDMELKR QDMWMRSGNY LANKISSAFR  240
SSKKAKKASD I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q2530.0A0A0K9Q253_ZOSMR; Putative Transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-23Trihelix family protein