PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma116g00670.1
Common NameZOSMA_116G00670
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 231aa    MW: 24560.9 Da    PI: 6.4938
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma116g00670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.96.1e-3735134199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++Cv+ap+f ++q +++fa+vhk+FGasn++kll++lp  +r+da++++++eA+ar+ dPv G+v+++l lq+q++ l+a
  Zosma116g00670.1  35 PCGACKFLRRKCTSGCVFAPHFQSDQgAARFAAVHKVFGASNISKLLSHLPLVRRHDAAATICFEAQARLADPVFGCVSTVLLLQRQVAALQA 127
                       7***********************9989***************************************************************** PP

            DUF260  93 elallke 99 
                       ela++++
  Zosma116g00670.1 128 ELAVVQT 134
                       ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.21534136IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-3735133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MIMDSGSIYA SSILPSFNGR KRSSSTDSAS TVSPPCGACK FLRRKCTSGC VFAPHFQSDQ  60
GAARFAAVHK VFGASNISKL LSHLPLVRRH DAAATICFEA QARLADPVFG CVSTVLLLQR  120
QVAALQAELA VVQTYLMNTQ LALSIAYQQQ QTANINATVN DLNNAILNPP PEEVSTAAVT  180
TPTSSFDFAM SSFPPFSSGG AVRMPMTTTY DSAEMMDISN PAGFVDEMFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-363513811113LOB family transfactor Ramosa2.1
5ly0_B5e-363513811113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027158543.13e-61LOB domain-containing protein 20
TrEMBLA0A0K9Q2231e-168A0A0K9Q223_ZOSMR; Putative LOB domain-containing protein
STRINGXP_004136784.13e-60(Cucumis sativus)
STRINGXP_004159662.13e-60(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-47LOB domain-containing protein 20