PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma118g00140.1

Common Name

ZOSMA_118G00140

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 498aa MW: 55968.3 Da PI: 7.8204

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma118g00140.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46	1.7e-14	237	329	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+ +GFsvr ++k+ + ++ +++++ Csk+g+++ t+ +rr++ ++r+gC a++k k+ + +++w+ +++ HnH+++ Zosma118g00140.1 237 YYDFASAMGFSVRLGSTKNVvdkgSGQKILVMKRLLCSKQGSPSLILPPTNGNRRKNGVSRCGCLASIKFKRIDrSDNWVTDTVIFYHNHPFT 329 999*********999888776556667899*********999999******************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-11	237	329	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MASPPSFANQ DQPSILQVSP NTNSIFVIPP PYRSQQFSYD HTNTSYNVSL KVRFNSPQCQ 60 TNDNTIPCEA DFSTSSFPHV TAGTIFQSGF VLRTSAEIRE SSANINVATA KTPSNLNFQF 120 NSPDRQTNVN PSACSDNVST PLDHDVVCST FFDSEFVKST SDDITQSSAK ILPTSANLGC 180 GTDKIPDNYC KRKYSSPAHD HSSPDHRNAS SSFSQCNKPC PVVDQVFPSY ELVVQSYYDF 240 ASAMGFSVRL GSTKNVVDKG SGQKILVMKR LLCSKQGSPS LILPPTNGNR RKNGVSRCGC 300 LASIKFKRID RSDNWVTDTV IFYHNHPFTT FSKIRYLPIN RSISQTSKLL FSSLAEVNVP 360 VSQQAAYFSN QFGGVQNMGC MKMDINNMVR DDRIDFKNYD VDLIVEEFEM NKSENEEFFY 420 NLVKDDEGRL KHLFWADPTM IENYKLFGDS VTFDTTYKTN VYSMVFGILC GVNHHRKTTI 480 FGSAFVRYFL FTFFLKXX

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MASPPSFANQ DQPSILQVSP NTNSIFVIPP PYRSQQFSYD HTNTSYNVSL KVRFNSPQCQ  60
TNDNTIPCEA DFSTSSFPHV TAGTIFQSGF VLRTSAEIRE SSANINVATA KTPSNLNFQF  120
NSPDRQTNVN PSACSDNVST PLDHDVVCST FFDSEFVKST SDDITQSSAK ILPTSANLGC  180
GTDKIPDNYC KRKYSSPAHD HSSPDHRNAS SSFSQCNKPC PVVDQVFPSY ELVVQSYYDF  240
ASAMGFSVRL GSTKNVVDKG SGQKILVMKR LLCSKQGSPS LILPPTNGNR RKNGVSRCGC  300
LASIKFKRID RSDNWVTDTV IFYHNHPFTT FSKIRYLPIN RSISQTSKLL FSSLAEVNVP  360
VSQQAAYFSN QFGGVQNMGC MKMDINNMVR DDRIDFKNYD VDLIVEEFEM NKSENEEFFY  420
NLVKDDEGRL KHLFWADPTM IENYKLFGDS VTFDTTYKTN VYSMVFGILC GVNHHRKTTI  480
FGSAFVRYFL FTFFLKXX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q3R6	0.0	A0A0K9Q3R6_ZOSMR; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-28	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma118g00140.1