PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma118g00260.1
Common NameZOSMA_118G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family S1Fa-like
Protein Properties Length: 72aa    MW: 7733.28 Da    PI: 10.6321
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma118g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA106.41.5e-33871770
              S1FA  7 eakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                      +a+Gln G ivll+v +++++f+ gn +ly yaqk+lPP+kkkP+skkk+k+e+lkqG+++PGe
  Zosma118g00260.1  8 DAQGLNSGTIVLLIVLTMVVLFFGGNVALYLYAQKTLPPKKKKPISKKKIKKERLKQGISAPGE 71
                      789************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.1E-31871IPR006779DNA binding protein S1FA
ProDomPD0190133.0E-41071No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MAEEFSGDAQ GLNSGTIVLL IVLTMVVLFF GGNVALYLYA QKTLPPKKKK PISKKKIKKE  60
RLKQGISAPG E*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.29e-22DNA-binding protein S1FA
RefseqXP_024026346.19e-22DNA-binding protein S1FA
SwissprotP425534e-14S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA0A0K9Q1V72e-42A0A0K9Q1V7_ZOSMR; DNA-binding protein S1FA1
STRINGXP_010104121.13e-21(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563