PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma118g00550.1
Common NameZOSMA_118G00550
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 136aa    MW: 15635.9 Da    PI: 7.6648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma118g00550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-142675455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                      +h    +rRR++iN++f +L++llP  +    ++K++Ka+iLe+A  Y k Lq
  Zosma118g00550.1 26 NHDCHKQRRREKINTGFKNLQTLLPFsS---MQTKMDKASILEQAYTYTKLLQ 75
                      6777789*******************55...*****************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-151382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.9542274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-142682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-112775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-92780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.99E-143279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEIYSMNDHG IGPSNSFSTD LLQSLNHDCH KQRRREKINT GFKNLQTLLP FSSMQTKMDK  60
ASILEQAYTY TKLLQQQIQM MRFGFSNDQG YKDIMFNSPY LYLQPLELPT NPENLHGLSP  120
MPVVSSGMTM NDFRM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3Z81e-95A0A0K9Q3Z8_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-09bHLH family protein