PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma118g00600.1
Common NameZOSMA_118G00600
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 148aa    MW: 17242 Da    PI: 10.3992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma118g00600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-142575255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      +++h   Er+RR++iNs++++L++ll ++   ++ K++ a++L  A+  +k+Lq
  Zosma118g00600.1 25 KQKHTVTERKRREKINSRLDQLKQLLLPN---NAYKMDRASMLDAAIAEVKHLQ 75
                      789**************************...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-162393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.9962374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-112575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-132582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-102579No hitNo description
SMARTSM003535.9E-102980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MKKSIEVDEE ETLIQKRKRT RYASKQKHTV TERKRREKIN SRLDQLKQLL LPNNAYKMDR  60
ASMLDAAIAE VKHLQYQVQV FSTVLQYPRS LIQQQLRNEE GAKEPVVAPV LFPPIPLIKQ  120
YMSVRGSRNE DVCFEKKRSY YTISGGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11635RKRTRYASKQKHTVTERKRR
23136ERKRRE
33237RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q4031e-104A0A0K9Q403_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-11phytochrome interacting factor 3