PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma11g00640.1

Common Name

ZOSMA_11G00640

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 177aa MW: 18637.5 Da PI: 5.729

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma11g00640.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	161.8	9.8e-51	21	115	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 e d++lPianv+rimkk+lP+nakisk+aket+qec+sefisfv+seasdkc++e+rkt+ngdd++wa++tlGf+ +v+p+k yl+kyr+ e+e Zosma11g00640.1 21 EGDQLLPIANVGRIMKKILPSNAKISKEAKETMQECASEFISFVASEASDKCNKERRKTVNGDDICWAFGTLGFDSFVQPMKRYLNKYRDYESE 114 679****************************************************************************************998 PP NF-YB 97 k 97 + Zosma11g00640.1 115 R 115 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-47	19	137	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-36	23	119	IPR009072	Histone-fold
Pfam	PF00808	2.6E-27	25	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.5E-17	53	71	No hit	No description
PRINTS	PR00615	2.5E-17	72	90	No hit	No description
PRINTS	PR00615	2.5E-17	91	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MTDGGSSSAA AKTGGSGGGG EGDQLLPIAN VGRIMKKILP SNAKISKEAK ETMQECASEF 60 ISFVASEASD KCNKERRKTV NGDDICWAFG TLGFDSFVQP MKRYLNKYRD YESERAVVAA 120 ATAASEATLF RHAGSDGGDD HNQDASSSDR HFKMDLAGSS SDSTTTTTLS FNVLGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-39	21	110	3	92	Transcription factor HapC (Eurofung)
4g92_B	4e-39	21	110	3	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411690.1	3e-56	PREDICTED: nuclear transcription factor Y subunit B-1-like
Swissprot	O23310	2e-48	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A0K9Q154	1e-126	A0A0K9Q154_ZOSMR; Nuclear transcription factor Y subunit B-5
STRING	GSMUA_Achr8P10020_001	1e-55	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-47	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Zosma11g00640.1

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]