PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma11g01070.1
Common NameZOSMA_11G01070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 336aa    MW: 38493.9 Da    PI: 9.2267
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma11g01070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1552.7e-1785177390
             FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Y  YA+++GFsv   +++++    + ++  ++r++ Cske + +  +  + ++rr++a +r++C a++k+k+e  +++w v+++  eHnH+l+
  Zosma11g01070.1  85 YYGYASKMGFSVHLGSTNYKtskdDGKKILVMRRLLCSKEWTVDLLHLPKLSKRRNNAISRCDCYASIKIKREGmSEVWIVKHIIFEHNHPLT 177
                      899*********98776555453333445689**********999999999***********************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1485177IPR004330FAR1 DNA binding domain
PfamPF105513.0E-6299334IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPNANYVHHH NHDTPLDNLR SPISSENNDL IGQLNAIISS VNASPSFFIP KQPTDTNSSS  60
DNVKLNSPPT VGQFYSSYHD AFDQYYGYAS KMGFSVHLGS TNYKTSKDDG KKILVMRRLL  120
CSKEWTVDLL HLPKLSKRRN NAISRCDCYA SIKIKREGMS EVWIVKHIIF EHNHPLTTPS  180
KVRFLPINRS ISSTSKLLFQ TLSKVNVPVS QQTVYFSSQV DGIEHMRCTQ LDISNMCRDD  240
RVDLKNYDVD LLVEEFEFKK SVQPNFFYFI VKDFSGRLKH VFWADSIMIQ HFKLFGDAVT  300
FDTTYKMNAY SLIFGMFCGV NHHRKTVIFG SAFLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138PKLSKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q1B20.0A0A0K9Q1B2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-37FAR1-related sequence 5