PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma11g01280.1

Common Name

ZOSMA_11G01280

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

ERF

Protein Properties

Length: 204aa MW: 23662.5 Da PI: 10.4932

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma11g01280.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.2e-18	8	57	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ ++r++lg+f+ta +Aa+a++aa++ ++g Zosma11g01280.1 8 HYRGVRKRP-WGRYAAEIRDPRK---KARVWLGTFDTAIQAAQAYDAAARDFRG 57 6******.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.36E-19	8	67	No hit	No description
Pfam	PF00847	1.0E-12	8	57	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.8E-31	8	66	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-20	8	66	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.866	8	65	IPR001471	AP2/ERF domain
SMART	SM00380	7.1E-34	8	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.7E-10	9	20	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.7E-10	31	47	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MVQKKEVHYR GVRKRPWGRY AAEIRDPRKK ARVWLGTFDT AIQAAQAYDA AARDFRGSKA 60 KTNFADQSSL VNNNTTPTDH RSLQLSYPIP LPLFKQINPP WERYLVDPQQ QQQLQQQTDG 120 SRNIPNLHPF LEAVEEREDK QVGNLNSDSD LDLDLNLNLR SSNQTHTADV NNKNNNNNKK 180 KEKEIRFFRF LSFQAILNLR FKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	9e-20	5	64	2	62	ATERF1
3gcc_A	9e-20	5	64	2	62	ATERF1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q1R6	1e-147	A0A0K9Q1R6_ZOSMR; Ethylene-responsive transcription factor 9

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44210.1	3e-26	erf domain protein 9

Link Out ? help Back to Top
Phytozome	Zosma11g01280.1