PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma120g00130.1
Common NameZOSMA_120G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 257aa    MW: 29233.9 Da    PI: 6.4002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma120g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-172370148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +lv++v + G + W+t +++ g++R++k+c++rw++yl
  Zosma120g00130.1 23 KGAWTAEEDRKLVNYVLENGDKKWRTLPSKAGLNRCGKSCRLRWLNYL 70
                      79********************************************97 PP
2Myb_DNA-binding53.94.1e-1776121148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Zosma120g00130.1  76 RGNISEDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 121
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3681870IPR017930Myb domain
SMARTSM007178.9E-132272IPR001005SANT/Myb domain
SuperFamilySSF466893.19E-2822117IPR009057Homeodomain-like
PfamPF002493.9E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-222477IPR009057Homeodomain-like
CDDcd001677.24E-92570No hitNo description
PROSITE profilePS5129426.37971125IPR017930Myb domain
SMARTSM007172.5E-1675123IPR001005SANT/Myb domain
PfamPF002491.5E-1576121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2578125IPR009057Homeodomain-like
CDDcd001671.78E-1180121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0009957Biological Processepidermal cell fate specification
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRKPERSSE KKSKDVVLKL TNKGAWTAEE DRKLVNYVLE NGDKKWRTLP SKAGLNRCGK  60
SCRLRWLNYL RPGIKRGNIS EDEEDLIIRL HNLLGNRWSL IAGRLPGRTD NEIKNHWNTH  120
LSKKLLTISD LNTKFCTDNN GNSISEFSPS VEEEAPLPLP LPLPTAHLMS SNTGATDHEA  180
LIQQLQHEDQ ELEIGRLRVV GMEDDDQYTN ANTTTDFETC HSPLGTWFQS FLGEFCSYND  240
LSTLLDYKDN CFLRFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28231277110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906239.12e-70transcription repressor MYB5-like
TrEMBLA0A0K9Q0T80.0A0A0K9Q0T8_ZOSMR; Transcription repressor MYB5
STRINGGSMUA_Achr2P17960_0013e-69(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17778510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-55MYB family protein