PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma120g00440.1

Common Name

ZOSMA_120G00440

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

YABBY

Protein Properties

Length: 194aa MW: 21275 Da PI: 8.1669

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma120g00440.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	82.5	1.3e-25	19	70	4	55
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 +s seq+Cyv+CnfC+t+lavsvP+tslfk+vtvrCGhC++llsvn++ + Zosma120g00440.1 19 QSPSEQLCYVHCNFCDTVLAVSVPYTSLFKTVTVRCGHCSNLLSVNMRALHL 70 6789******************************************998773 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.7E-28	21	144	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSSSSSSSAA TFSLDHLTQS PSEQLCYVHC NFCDTVLAVS VPYTSLFKTV TVRCGHCSNL 60 LSVNMRALHL PPPLPPPPPP STITQHHQQQ LLIHNHCNLL EEISYSPPPP PPLAPHPVTV 120 TPTPAEKTTP LVNNQSNTVK ESLTLNKRGE DHQQSSLQQP PAVNRRERDR EYHLPTTGSS 180 RKRSNASKLE TQI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018685707.1	4e-34	PREDICTED: protein YABBY 4-like isoform X2
TrEMBL	A0A0K9Q0V8	1e-135	A0A0K9Q0V8_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	4e-24	YABBY family protein

Link Out ? help Back to Top
Phytozome	Zosma120g00440.1