PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma121g00710.1

Common Name

ZOSMA_121G00710

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 458aa MW: 50051 Da PI: 7.311

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma121g00710.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C++sF + ++ + H t+ Zosma121g00710.1 110 YECPVCSRSFGSEEQVTDHVDTC 132 99*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF143503	2.62E-18	166	254	IPR018997	PUB domain
CDD	cd09212	3.27E-18	168	251	No hit	No description
SMART	SM00580	3.0E-13	170	235	IPR018997	PUB domain
Pfam	PF09409	3.5E-16	171	242	IPR018997	PUB domain
SuperFamily	SSF54236	2.84E-13	322	428	IPR029071	Ubiquitin-related domain
SMART	SM00166	3.3E-4	345	431	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	1.3E-9	347	427	No hit	No description
PROSITE profile	PS50033	13.365	348	429	IPR001012	UBX domain
Pfam	PF00789	1.2E-6	349	426	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MSDVKDMVKG FMKKVSSSSS GKFKGQGRVL GSSSTTPPSP SVHPLVSRSS ATPNPRTPSS 60 SRQPPPPPSP SPDSLPSSQG TDSNEAFRPF QALISSGKRT DDSISSVGNY ECPVCSRSFG 120 SEEQVTDHVD TCLSDNAGQD VEENVEPNDD RRDDIQLAVA VYLSASPSDG SVEILTKLFG 180 NLCREPENEK FRRVRMNNPK IKEAVGEVNG GLELLQCVGF NLGEEEGGVW ATMPQPGKEQ 240 VSLIKQALEI LGKRNGLKVK GDDMKIESPS NVDVQRTVIE PKKIDRQVRV FFLIPGSSPA 300 KIELPDSFYN ISAVELKREA ELRKKKLADS QLLIPKSLKE KQLKAARRKY KAAIIRIQFP 360 DGVFLQGVFL PWESTIALYK FVSAALKDPS MEFELLKPIP HKRRVISSSV DKPATIEEEE 420 LVPSALVKFK AIETDCSVFI GLTNELLEGS EPLKPTA*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MSDVKDMVKG FMKKVSSSSS GKFKGQGRVL GSSSTTPPSP SVHPLVSRSS ATPNPRTPSS  60
SRQPPPPPSP SPDSLPSSQG TDSNEAFRPF QALISSGKRT DDSISSVGNY ECPVCSRSFG  120
SEEQVTDHVD TCLSDNAGQD VEENVEPNDD RRDDIQLAVA VYLSASPSDG SVEILTKLFG  180
NLCREPENEK FRRVRMNNPK IKEAVGEVNG GLELLQCVGF NLGEEEGGVW ATMPQPGKEQ  240
VSLIKQALEI LGKRNGLKVK GDDMKIESPS NVDVQRTVIE PKKIDRQVRV FFLIPGSSPA  300
KIELPDSFYN ISAVELKREA ELRKKKLADS QLLIPKSLKE KQLKAARRKY KAAIIRIQFP  360
DGVFLQGVFL PWESTIALYK FVSAALKDPS MEFELLKPIP HKRRVISSSV DKPATIEEEE  420
LVPSALVKFK AIETDCSVFI GLTNELLEGS EPLKPTA*

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019255523.1	1e-150	PREDICTED: plant UBX domain-containing protein 2-like
Swissprot	Q9ZU93	1e-147	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A0K9Q356	0.0	A0A0K9Q356_ZOSMR; UBX domain-containing protein
STRING	XP_009793042.1	1e-148	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6756	3	3

Link Out ? help Back to Top
Phytozome	Zosma121g00710.1

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]