PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma122g00770.1
Common NameZOSMA_122G00770
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 699aa    MW: 77870.8 Da    PI: 6.7545
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma122g00770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.3e-1947102257
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       +k +++++ q+++Le +F  +++p++++reeLA ++gL+ +qVk+WFqNrR+  kk
  Zosma122g00770.1  47 KKNHRHSQVQIRTLELYFSHCPHPDEKQREELAGRIGLDYQQVKFWFQNRRTELKK 102
                       6677899********************************************99887 PP
2START98.31.4e-3129942878206
                       EEEEEEEECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
             START  78 kaetlevissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                       +a+t++ i+          ++ ae+q lsplvp R+  f+R+++ql+ g+wv+vdvS+ + ++++   s+  +++lpSg++i++ +ng sk+t
  Zosma122g00770.1 299 RASTVAMINGTtlveILMDVIRAEFQILSPLVPvREANFLRMCKQLSLGVWVVVDVSI-PGTFNS---SLTASQKLPSGCVIQDFPNGQSKIT 387
                       5666666666644333345789***********************************8.566655...689999******************* PP

                       EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       wveh +++++ +h+  rs+v+sg+  gak+wv tl+rqc++
  Zosma122g00770.1 388 WVEHSEYDEKNIHESCRSMVSSGAGLGAKKWVYTLKRQCQT 428
                       ***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-1833103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-1943110IPR009057Homeodomain-like
PROSITE profilePS5007116.7343103IPR001356Homeobox domain
SMARTSM003892.7E-1745107IPR001356Homeobox domain
CDDcd000867.31E-1747103No hitNo description
PfamPF000461.7E-1647102IPR001356Homeobox domain
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
SuperFamilySSF559614.4E-18234428No hitNo description
SMARTSM002348.7E-8242428IPR002913START domain
PROSITE profilePS5084823.305262431IPR002913START domain
PfamPF018525.4E-27299428IPR002913START domain
SuperFamilySSF559611.21E-8447626No hitNo description
SuperFamilySSF559611.21E-8654674No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MVKTNNKSGL NKFKRSWSGQ QSPNKNNTEI TDNSNQNDAS NCVSKEKKNH RHSQVQIRTL  60
ELYFSHCPHP DEKQREELAG RIGLDYQQVK FWFQNRRTEL KKQLGKHENA VLRLENDKLR  120
IFINSGQYVD IRSKCVNCGH SVGISSGEQH APPVNNNNTP NIWPNQPTEV FRTFIPQSPY  180
PNLNTGDSSS SPAPIPIPMP APINTDEVGL EKIMAPPSLP IAPQIQPNVP ICPPELSSMY  240
FELGTAAIEE LVKLVLAETN LWTKNIDDPN ETLNFHEYNR TYPRIILPKP SGFASEGTRA  300
STVAMINGTT LVEILMDVIR AEFQILSPLV PVREANFLRM CKQLSLGVWV VVDVSIPGTF  360
NSSLTASQKL PSGCVIQDFP NGQSKITWVE HSEYDEKNIH ESCRSMVSSG AGLGAKKWVY  420
TLKRQCQTLD FLIYSSFSNL VVNGLTEEGF SNLLKLAHRM TLYFYQGACP SLDMWNELSV  480
EGLGSDVRVL SRKCFNLQGQ PTGIILNGTR SVWLPVSHAH LFEYLRDEKI RSEWDILSNQ  540
TPMHEVAFVT KDRDSGNRIS LIHTEAVNES IPGMLLIQET TTDESGSLVV YAPVDIPTLQ  600
GVIHGGDPDG ISLLSSGFSI IPNTVHVLKN EADRDFKGKG KKVADSPDIR RIVGSVLTMT  660
FQILVIDDPN VEMPADSLQM IKTLLVTTLE KIKAAMVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q0Y50.0A0A0K9Q0Y5_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-149homeodomain GLABROUS 1