PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma122g00780.1

Common Name

ZOSMA_122G00780

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HB-other

Protein Properties

Length: 201aa MW: 23797.5 Da PI: 10.3671

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma122g00780.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.8e-18	46	102	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r+k +++ +eq+e Le++F++n+ p++++r +L +++++++r+Vk+WFqNrR+k+kk Zosma122g00780.1 46 RSKYQRHHPEQIEKLERFFQRNSLPNERQRFDLGMEIKMDTRKVKYWFQNRRTKMKK 102 6788999*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-17	36	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-17	39	106	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.775	43	103	IPR001356	Homeobox domain
SMART	SM00389	4.4E-13	45	107	IPR001356	Homeobox domain
Pfam	PF00046	5.7E-16	46	102	IPR001356	Homeobox domain
CDD	cd00086	6.13E-12	46	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEQGKMNVMK NGSGSGAIEC VENKQQLTIE EGSRSLIVVT DNTAVRSKYQ RHHPEQIEKL 60 ERFFQRNSLP NERQRFDLGM EIKMDTRKVK YWFQNRRTKM KKQQEQRESA VLKRQNIRYF 120 AENVYLREKL RNPICTICGD ASECKEIPVE AFQLQVENIR LREELQRLSL LRMEILNNNP 180 MFRKSGAMLG KLLFQRRDQV *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	102	QNRRTKMKKQ
2	94	101	NRRTKMKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q2Y5	1e-145	A0A0K9Q2Y5_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	3e-32	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Zosma122g00780.1