PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma122g00810.1
Common NameZOSMA_122G00810
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 434aa    MW: 47565.6 Da    PI: 6.3735
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma122g00810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.53.3e-17340373134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs+C++  Tp+WR gp g+ktLCnaCG++y++ +
  Zosma122g00810.1 340 CSHCRAVVTPQWRAGPMGPKTLCNACGVRYKSGR 373
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.319334370IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-13334384IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-13338397No hitNo description
Gene3DG3DSA:3.30.50.102.1E-13338371IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.88E-13340396No hitNo description
PfamPF003209.5E-15340373IPR000679Zinc finger, GATA-type
PROSITE patternPS003440340365IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAHSNLFTQQ IGGAQGSSAG AGIFRTRERH MLGMPPLEQQ IYGGAGRGPE QEPEQLGNPN  60
VMDEVNDMLN YDLIDDLLDF TAAEIESEPF LFDHHTAPKI DEIQVNSTVL PTVDIDPHTL  120
EIPPLENSFR QCDDLNGPGL EWLSNFIDQC CAPLEVGIMM KSADYYSGKA SADDGKQISQ  180
LPNPSSIPAH QSISNQQRLI DDDKDRDKDN CIVVENGPPL PPPALPSVSP SSSSSSSMNT  240
GSKAPIIISN SSGIFTTLTN RGRAPRTKRR KFIPKHPLNK RPVDFLIPAL ECDITEERQS  300
KKLKTVHPSS TSVEINLPPT PSSQPHLVPC QKDEETIRNC SHCRAVVTPQ WRAGPMGPKT  360
LCNACGVRYK SGRLFPEYRP SASPTFEESR HSNNHKKVVE LRGMNANVAK DVKTPASTKG  420
CELLNYINDG CRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q0K40.0A0A0K9Q0K4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-31GATA family protein