PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma123g00220.1
Common NameZOSMA_123G00220
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 448aa    MW: 49879.6 Da    PI: 6.8668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma123g00220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-1864111148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEd++l++++ ++G g+W++ +++ g++R++k+c++rw +yl
  Zosma123g00220.1  64 KGHWTPEEDKKLKNYISKHGHGSWRALPKHAGLNRCGKSCRLRWTNYL 111
                       789*******************************************97 PP
2Myb_DNA-binding54.72.3e-17117162148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T  Ede++++++ +lG++ W+tIa ++  gRt++++k++w+++l
  Zosma123g00220.1 117 RGPFTDSEDEKIIHLHSRLGNK-WSTIATELD-GRTDNEIKNYWNTHL 162
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2555114IPR009057Homeodomain-like
PROSITE profilePS5129417.61759111IPR017930Myb domain
SuperFamilySSF466891.35E-3062158IPR009057Homeodomain-like
SMARTSM007175.9E-1563113IPR001005SANT/Myb domain
PfamPF002493.4E-1764111IPR001005SANT/Myb domain
CDDcd001671.17E-1267111No hitNo description
PROSITE profilePS5129427.248112166IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-27115166IPR009057Homeodomain-like
SMARTSM007171.3E-15116164IPR001005SANT/Myb domain
PfamPF002493.7E-15117162IPR001005SANT/Myb domain
CDDcd001671.05E-11119162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MKFTSHPNLL DFNSIRPSFI DRSSWPPRAF PFLIGDIQNP KLPRYLIDRT MGRSPCCDDS  60
GLTKGHWTPE EDKKLKNYIS KHGHGSWRAL PKHAGLNRCG KSCRLRWTNY LRPDIKRGPF  120
TDSEDEKIIH LHSRLGNKWS TIATELDGRT DNEIKNYWNT HLRKKLLQMG IDPVTHRPRA  180
DLTLLATIPN LLAAAAANLG TGLPSIFSLE NSIRLQADSA QLAKEQFIQN LVQVLSNGYN  240
INTSAGLPHP SDLIPSPPSP SSFPKDYTLP NDFQSMNQQL LLNNGNYNNY NSVNEIGECS  300
TQQVHGFSDH LPIIQTPVSE TFASIPTITA GAAIPHVPHH QSPSTLNVPS YNFDHQFNSL  360
EDNLDRFGVG KSYSQMSSPC TNQTSTASIV SNSPDNLNVD QMHGLQNINT STANSSTMNT  420
TDEDQPWGNT NFDDYLSTNF NWSDLLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-28621662105C-Myb DNA-Binding Domain
1msf_C3e-28621662105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933448.11e-92transcription factor MYB41-like
TrEMBLA0A0K9Q0J20.0A0A0K9Q0J2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-79myb domain protein 9