PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma123g00340.1
Common NameZOSMA_123G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 123aa    MW: 13740.8 Da    PI: 9.9792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma123g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-2059106255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +g+W+AeIr       +kr +lg+f+tae+Aa+a+++a+++l+g
  Zosma123g00340.1  59 KFRGVRQRP-WGKWAAEIRGD-----KKRLWLGTFDTAEDAAAAYDEAARRLKG 106
                       79*******.*******9993.....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3159120IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2259114IPR016177DNA-binding domain
PfamPF008472.4E-1459106IPR001471AP2/ERF domain
CDDcd000181.03E-1759113No hitNo description
PROSITE profilePS5103222.20759114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-2959114IPR001471AP2/ERF domain
PRINTSPR003671.8E-116071IPR001471AP2/ERF domain
PRINTSPR003671.8E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MNNCLCCLLF WSPICLLSHQ NYQQFSNLLL DEGAVGNHDL TARTSGKKFC LLKERNNGKF  60
RGVRQRPWGK WAAEIRGDKK RLWLGTFDTA EDAAAAYDEA ARRLKGPNAV TNFGNGIKLP  120
KI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-19561131171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519293.11e-24pathogenesis-related genes transcriptional activator PTI6
RefseqXP_028215181.11e-24pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A0K9Q0862e-85A0A0K9Q086_ZOSMR; Uncharacterized protein
STRINGGLYMA02G40320.14e-24(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.13e-17cytokinin response factor 3