PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma124g00230.1
Common NameZOSMA_124G00230
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 188aa    MW: 20403.6 Da    PI: 7.4987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma124g00230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-183484155
               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++y GVr+++ +gr++AeIrd       +  r++lg+f+t eeAa a++ a+++l+g
  Zosma124g00230.1 34 PKYIGVRRRP-WGRYAAEIRDaI-----TkERHWLGTFDTSEEAAVAYDSAARSLRG 84
                      79********.**********55.....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-123484IPR001471AP2/ERF domain
CDDcd000185.29E-273491No hitNo description
Gene3DG3DSA:3.30.730.105.4E-283592IPR001471AP2/ERF domain
SMARTSM003802.3E-303598IPR001471AP2/ERF domain
PROSITE profilePS5103220.4153592IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213592IPR016177DNA-binding domain
PRINTSPR003673.0E-83647IPR001471AP2/ERF domain
PRINTSPR003673.0E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDFTASPSPS KQKNKKQPAK KKQHKKQELN GIGPKYIGVR RRPWGRYAAE IRDAITKERH  60
WLGTFDTSEE AAVAYDSAAR SLRGSQARTN FTYGEIPARS SVANATYFSP DDVIENQWVD  120
GGNGYVEYLS SSQNNLYPVM EVVKEGDCRD SELAASPSVF GEQPATGIVS IGSGGGELSD  180
VVFGMTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1935931473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022980062.14e-37ethylene-responsive transcription factor LEP-like
TrEMBLA0A0K9Q2C61e-136A0A0K9Q2C6_ZOSMR; Uncharacterized protein
STRINGPOPTR_0003s07540.16e-35(Populus trichocarpa)
STRINGcassava4.1_025891m4e-35(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-35ERF family protein