PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma125g00170.1

Common Name

ZOSMA_125G00170

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Nin-like

Protein Properties

Length: 702aa MW: 78288.1 Da PI: 6.0643

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma125g00170.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.6	2.4e-28	466	515	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl++l++yFs+++k+AAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Zosma125g00170.1 466 NTISLDVLQHYFSGSLKNAAKSIGVCPTTLKRICRQHGISRWPSRKIRKV 515 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.62	447	535	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-24	467	515	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.21E-20	615	699	No hit	No description
Pfam	PF00564	1.7E-14	619	699	IPR000270	PB1 domain
SMART	SM00666	2.0E-19	619	701	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.2E-21	619	699	No hit	No description
PROSITE profile	PS51745	22.491	619	701	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005840	Cellular Component	ribosome
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MDGFLTGIEH DLQQDEEFLN FNFNYSDILG FSDDSDLVSP AVVEANGEMT DSVVDESKQL 60 ELELIRSTDC FDSVIPKSLG DVGGGFCSSI IVSKMMTALS IFNQSSKLGF LAQVWMPMTI 120 GNDFLLSTYD QPYLLDRNLS GYREVSRLFT FATRQPSSEY PLPNTPCMSL GLPGRVFMSR 180 RAEWTSNVRY YSKDEFLRAN YASTHQVRGS LAVPVIDPSC DGNSCCAVVE IATTTEKNNF 240 HSEIDSICSS LQVVNLMMPK SPNQQKNLTQ SQKSAISEIS DVLSTICREH MLPLALTWIP 300 SDITNSSRKS STLCVLESAC YINDQNMNEF LHACGEHQLN EGQGTVGRAL QSNHPFFCPD 360 VKGYDISDYP LVHHARRFGL NAAVAIRLRS THTGNDHYIL ELFLPVNCNE SSEQQHLLNN 420 LSSTMQRLCR SLRTVSDEAS GSQNQISQTL DAKKHMGKKH VGKERNTISL DVLQHYFSGS 480 LKNAAKSIGV CPTTLKRICR QHGISRWPSR KIRKVNRSLK KIQTVIDSVE SELKYDPASG 540 NIFATSVITP SNPQRRHEIV DTSSINPIKD HPRSDNHLVS HNQNESNSQN SLRTTGSFDG 600 SDAGSQPKGH GPVPVDGSTI TVKATYRDNT VRFSFTPSTG CFLLFEEIAK RFELTIGMFQ 660 LKYMDDEDDW VTLENDGDLQ ECIDLLELDR LNCLRILVRC S*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MDGFLTGIEH DLQQDEEFLN FNFNYSDILG FSDDSDLVSP AVVEANGEMT DSVVDESKQL  60
ELELIRSTDC FDSVIPKSLG DVGGGFCSSI IVSKMMTALS IFNQSSKLGF LAQVWMPMTI  120
GNDFLLSTYD QPYLLDRNLS GYREVSRLFT FATRQPSSEY PLPNTPCMSL GLPGRVFMSR  180
RAEWTSNVRY YSKDEFLRAN YASTHQVRGS LAVPVIDPSC DGNSCCAVVE IATTTEKNNF  240
HSEIDSICSS LQVVNLMMPK SPNQQKNLTQ SQKSAISEIS DVLSTICREH MLPLALTWIP  300
SDITNSSRKS STLCVLESAC YINDQNMNEF LHACGEHQLN EGQGTVGRAL QSNHPFFCPD  360
VKGYDISDYP LVHHARRFGL NAAVAIRLRS THTGNDHYIL ELFLPVNCNE SSEQQHLLNN  420
LSSTMQRLCR SLRTVSDEAS GSQNQISQTL DAKKHMGKKH VGKERNTISL DVLQHYFSGS  480
LKNAAKSIGV CPTTLKRICR QHGISRWPSR KIRKVNRSLK KIQTVIDSVE SELKYDPASG  540
NIFATSVITP SNPQRRHEIV DTSSINPIKD HPRSDNHLVS HNQNESNSQN SLRTTGSFDG  600
SDAGSQPKGH GPVPVDGSTI TVKATYRDNT VRFSFTPSTG CFLLFEEIAK RFELTIGMFQ  660
LKYMDDEDDW VTLENDGDLQ ECIDLLELDR LNCLRILVRC S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020245889.1	0.0	LOW QUALITY PROTEIN: protein NLP2
Swissprot	Q0JC27	1e-159	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A0K9Q052	0.0	A0A0K9Q052_ZOSMR; Putative 60S ribosomal protein L38
STRING	Bo4g019840.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-157	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Zosma125g00170.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]