PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma127g00040.1

Common Name

ZOSMA_127G00040

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 181aa MW: 20047.1 Da PI: 6.2582

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma127g00040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	128.9	1.8e-40	33	119	3	89
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 +drflPianvsrim+++lP naki+k+ake+vqecvsefisf+t+ea +kc+rek ++ingddllw++ l fe y lk++l + Zosma127g00040.1 33 SHDRFLPIANVSRIMRRALPFNAKIAKEAKEMVQECVSEFISFITGEAVEKCEREKCNSINGDDLLWSMNRLDFESYTICLKIHLVR 119 68*********************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.9E-37	31	118	IPR009072	Histone-fold
SuperFamily	SSF47113	1.9E-27	35	117	IPR009072	Histone-fold
Pfam	PF00808	1.3E-21	37	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-11	65	83	No hit	No description
PRINTS	PR00615	1.1E-11	84	102	No hit	No description
PRINTS	PR00615	1.1E-11	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MAQETSKDVC NGIEGDSATG SASNSNPGSD ASSHDRFLPI ANVSRIMRRA LPFNAKIAKE 60 AKEMVQECVS EFISFITGEA VEKCEREKCN SINGDDLLWS MNRLDFESYT ICLKIHLVRS 120 QLILEYILEI NIIFHKPSDV ILIKSLFKCI LFLGCQTKPD SFRLGLVSPT SRVEAQARLA 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	6e-34	34	119	4	89	Transcription factor HapC (Eurofung)
4g92_B	6e-34	34	119	4	89	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416841.1	3e-42	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	Q69J40	3e-41	NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10
TrEMBL	A0A0K9PZN2	1e-130	A0A0K9PZN2_ZOSMR; Nuclear transcription factor Y subunit B-2
STRING	GLYMA15G12570.1	1e-40	(Glycine max)
STRING	GSMUA_Achr2P13670_001	1e-40	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-42	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Zosma127g00040.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]