PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma127g00180.1
Common NameZOSMA_127G00180
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 236aa    MW: 25611.7 Da    PI: 9.3577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma127g00180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00126890123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      +kC+ C ksF++   L  H  +H
  Zosma127g00180.1 68 HKCSVCEKSFRSYQALGGHKASH 90
                      79**********99999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-136792IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4326895IPR007087Zinc finger, C2H2
SMARTSM003550.0296890IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.44E-76890No hitNo description
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-7120147No hitNo description
SMARTSM003550.31125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808125152IPR007087Zinc finger, C2H2
PfamPF139123.5E-12125149IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTAAAVPSDT SSPWTKRKRT RTRMRKERRQ PRSNNQMTEE EHIASLLLTL AQDDRHNNTV  60
STEQKLTHKC SVCEKSFRSY QALGGHKASH RKPTASSPST SLSPGVYFDT LITPTTITSL  120
TGRIHQCSIC FKVFPSGQAL GGHKRCHYDG STSGIVTGVS SSIATNDSTT GNSDDDNNRG  180
SRFGVEIDLN VPAIPSEFLF ESDGGGGRMR CVVTEVDDVV QSPLGFKKPR LLIPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q1T81e-174A0A0K9Q1T8_ZOSMR; Zinc-finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-31salt tolerance zinc finger