PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma127g00350.1
Common NameZOSMA_127G00350
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 252aa    MW: 28964.4 Da    PI: 7.6135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma127g00350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +lv  v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Zosma127g00350.1 13 KGPWTEEEDMQLVYFVSLFGERRWDFIAKVSGLHRTGKSCRLRWVNYL 60
                      79********************************************97 PP
2Myb_DNA-binding53.55.3e-1766111148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rgr++++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  Zosma127g00350.1  66 RGRMSPQEERLVLELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 111
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.598860IPR017930Myb domain
SuperFamilySSF466894.03E-3011107IPR009057Homeodomain-like
SMARTSM007173.5E-161262IPR001005SANT/Myb domain
PfamPF002499.5E-151360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-201467IPR009057Homeodomain-like
CDDcd001673.57E-111560No hitNo description
PROSITE profilePS5129425.94861115IPR017930Myb domain
SMARTSM007174.4E-1665113IPR001005SANT/Myb domain
PfamPF002495.0E-1566110IPR001005SANT/Myb domain
CDDcd001672.27E-1068111No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2368114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEEKNLSSTT MRKGPWTEEE DMQLVYFVSL FGERRWDFIA KVSGLHRTGK SCRLRWVNYL  60
HPGLKRGRMS PQEERLVLEL HSRWGNRWSR IARKLPGRTD NEIKNYWRTH MRKKAQERKR  120
NIAASTASSS SSTITTTHAV GESGGGGGNQ TLVLQPRETT ETGCYPMEKI WDEIDQSSEM  180
MSRPTSVVDY HFKEENWRID EHSCFHPPTT SSYDDVEGGL WRMNQEEEKE LMNLMSSIGC  240
GGDTLLSNPN T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-29131154105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-281311558159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-281311558159MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-29131154105C-Myb DNA-Binding Domain
1msf_C6e-29131154105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400918.18e-81transcription factor MYB59 isoform X1
SwissprotQ4JL845e-78MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A0K9Q0060.0A0A0K9Q006_ZOSMR; Transcription factor MYB59
STRINGXP_006400918.13e-80(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-77myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]