PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma128g00060.1
Common NameZOSMA_128G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 189aa    MW: 20933.7 Da    PI: 9.2853
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma128g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00094264123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+++F++   L  H  +H
  Zosma128g00060.1 42 FECKTCNRRFPSFQALGGHRASH 64
                      89**********99999998887 PP
2zf-C2H212.10.0006192114123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  Fs    L  H+r+H
  Zosma128g00060.1  92 HECSICGAEFSVGQALGGHMRRH 114
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-840114No hitNo description
PfamPF139121.0E-124166IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0144269IPR007087Zinc finger, C2H2
SMARTSM003550.134264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-490115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.2E-1192116IPR007087Zinc finger, C2H2
SMARTSM003550.1192114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.57792119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKTSIIGEND VNMVDILMLL SRRIDTDHSG SSMQPQALNR TFECKTCNRR FPSFQALGGH  60
RASHKKSKLL AVRHDGSTYL QKQAKLKKPK SHECSICGAE FSVGQALGGH MRRHRDRGNF  120
VGDDSMPSFA SGEHDMYKKK SSSGDDGSSV DAEKKNWGFD LNMKPPVENN DTDELRLLTF  180
TLGFPVLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PZJ21e-138A0A0K9PZJ2_ZOSMR; Putative Zinc finger protein
STRINGVIT_13s0019g00480.t011e-34(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-29C2H2 family protein