PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma128g00240.1
Common NameZOSMA_128G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 267aa    MW: 29774.3 Da    PI: 6.9891
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma128g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-192079357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       R++++keq+  Le+l+++  r+p+a++++++A kl    +++ ++V++WFqN++a++++
  Zosma128g00240.1 20 ARWNPSKEQIGMLESLYKQgIRTPTADQIQDIAGKLrehgSIEGKNVFYWFQNHKARQRQ 79
                      7*****************99**************************************96 PP
2Wus_type_Homeobox110.49.7e-361981365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RW+P++eQi +Le+lyk+G+rtP++++iq+i+ +L+e+G ie+kNVfyWFQN+kaR+rqkq
   Zosma128g00240.1 19 NARWNPSKEQIGMLESLYKQGIRTPTADQIQDIAGKLREHGSIEGKNVFYWFQNHKARQRQKQ 81
                       78***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.6411580IPR001356Homeobox domain
SMARTSM003898.0E-61784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.5E-82079IPR009057Homeodomain-like
SuperFamilySSF466891.07E-112085IPR009057Homeodomain-like
PfamPF000463.5E-172079IPR001356Homeobox domain
CDDcd000869.64E-62181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGGMELEEDK AAAAAVLTNA RWNPSKEQIG MLESLYKQGI RTPTADQIQD IAGKLREHGS  60
IEGKNVFYWF QNHKARQRQK QKQETMACFN RLLHKASKVA PSPSPCPSSM YLPQHQHRHH  120
QTLVPPPPPI RCTANAVIDF RTVLCSPYFF PHPPPGIGYY PHYPPVILSG TVPPNLSNDA  180
EQFQRSYFSP HCSYKPNNQS AVGTHETLQL FPLHPTRLST SEVTFPTNSV NSTSATTISS  240
QSREEESGDD DNDDDGDHLV LNLECR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PZG30.0A0A0K9PZG3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-43WUSCHEL related homeobox 2