PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma129g00210.1

Common Name

ZOSMA_129G00210

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 656aa MW: 73990.7 Da PI: 8.08

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma129g00210.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	107	128	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rHir H Zosma129g00210.1 107 KCGKCSREFCSMVNYRRHIRIH 128 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.245	106	128	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MAKSEHEEPG YMGNHSHTIF QEPFFSFSTG TSYPFIRLRN AIDQQGNNKN PKGSNIENDI 60 NSPKSDTNGI IKKNRGGITL LKNDHSEIEK YLPGWPLLPP SKISLQKCGK CSREFCSMVN 120 YRRHIRIHRR SINKDKVCPK NTEYLCQFWD KLSLDKKREL LSFNNVALEE VDGLSIINAL 180 TSLIQKSWFS SLPKVYLKTG SNLLDLIEDK SFTSISSHDL FSILDDASEK TFLCAGNAID 240 FGVKKFVFDL GIEKIAFDPK NVIACTSFIL EQKLVKAWLA DKESEALKCE KLLVEEEEAA 300 QKRQAQLLER KRQKKLRQKE HRANGHSSGN KSRFKGNASD IAVDILIDNP EKSLRSLNIT 360 VEDASVTCEF ESGDHHMQIE SGQIETTVFQ TPPLSKSTNL TNNFQKIPTT KCVLVKKTHM 420 VWTEKNKTES SDKVELVTKD GSNHCNNSEV LIGSIPVSVG NNHNLDVTTE RLFKPNAHSL 480 SNCGCHPSVK QWKPVNKQEG STNPLALQNS SMNETKLISS ERNSLYHGEN GSIDEDIVGI 540 SKVRVGSICP TTQRFSSQVA MDFLTQRWNA AHSSEHVKIG VSQNSELFKN MEEVLQKIDY 600 SCLDISGHPD EHMLTVDHYL DSTISHVYKS KIPPQNEKNY ETKYIPKQRN GMLER*

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MAKSEHEEPG YMGNHSHTIF QEPFFSFSTG TSYPFIRLRN AIDQQGNNKN PKGSNIENDI  60
NSPKSDTNGI IKKNRGGITL LKNDHSEIEK YLPGWPLLPP SKISLQKCGK CSREFCSMVN  120
YRRHIRIHRR SINKDKVCPK NTEYLCQFWD KLSLDKKREL LSFNNVALEE VDGLSIINAL  180
TSLIQKSWFS SLPKVYLKTG SNLLDLIEDK SFTSISSHDL FSILDDASEK TFLCAGNAID  240
FGVKKFVFDL GIEKIAFDPK NVIACTSFIL EQKLVKAWLA DKESEALKCE KLLVEEEEAA  300
QKRQAQLLER KRQKKLRQKE HRANGHSSGN KSRFKGNASD IAVDILIDNP EKSLRSLNIT  360
VEDASVTCEF ESGDHHMQIE SGQIETTVFQ TPPLSKSTNL TNNFQKIPTT KCVLVKKTHM  420
VWTEKNKTES SDKVELVTKD GSNHCNNSEV LIGSIPVSVG NNHNLDVTTE RLFKPNAHSL  480
SNCGCHPSVK QWKPVNKQEG STNPLALQNS SMNETKLISS ERNSLYHGEN GSIDEDIVGI  540
SKVRVGSICP TTQRFSSQVA MDFLTQRWNA AHSSEHVKIG VSQNSELFKN MEEVLQKIDY  600
SCLDISGHPD EHMLTVDHYL DSTISHVYKS KIPPQNEKNY ETKYIPKQRN GMLER*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	315	ERKRQKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PZS2	0.0	A0A0K9PZS2_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	4e-53	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Zosma129g00210.1