PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma12g00350.1
Common NameZOSMA_12G00350
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24910.7 Da    PI: 10.2363
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma12g00350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.2e-291059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rienk+nrqvtf+kRr g+lKKA+E+SvLCdaeva i+fs +gkly ys+
  Zosma12g00350.1 10 RIENKINRQVTFCKRRSGLLKKAHEISVLCDAEVAAIVFSAKGKLYQYST 59
                     8***********************************************96 PP
2K-box851.6e-28891751399
            K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++ + + e+ k+k++ie+L ++ R+l+GedL+sLs k+L+ LeqqLe++l+kiR++K+++l+++i +lq kek+l ++n++L+kkl+
  Zosma12g00350.1  89 EQGTRSLEYLKMKSKIESLCKNERNLMGEDLDSLSTKDLRVLEQQLESGLTKIRAQKTNMLFDSIADLQSKEKMLLQQNHSLEKKLK 175
                      4556678******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.637161IPR002100Transcription factor, MADS-box
CDDcd002653.33E-37273No hitNo description
SuperFamilySSF554551.96E-31284IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003197.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.0190180IPR002487Transcription factor, K-box
PfamPF014865.4E-2492174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRGRVELRR IENKINRQVT FCKRRSGLLK KAHEISVLCD AEVAAIVFSA KGKLYQYSTD  60
SRMENILERF ERHYYAGKHL PEPNFQYSEQ GTRSLEYLKM KSKIESLCKN ERNLMGEDLD  120
SLSTKDLRVL EQQLESGLTK IRAQKTNMLF DSIADLQSKE KMLLQQNHSL EKKLKNERNA  180
AMAKQTEMNQ RGKTKQDIRK SEPLPNLNVR YMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-19811764103Developmental protein SEPALLATA 3
4ox0_B1e-19811764103Developmental protein SEPALLATA 3
4ox0_C1e-19811764103Developmental protein SEPALLATA 3
4ox0_D1e-19811764103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313669.14e-72truncated transcription factor CAULIFLOWER A-like
RefseqXP_016667078.14e-72PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ6E6S73e-70AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0K9PZB21e-155A0A0K9PZB2_ZOSMR; Agamous-like MADS-box protein AGL8
STRINGGSMUA_Achr4P23540_0015e-70(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-69AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]