PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma12g00480.1
Common NameZOSMA_12G00480
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 260aa    MW: 29275 Da    PI: 6.1698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma12g00480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.3e-162470248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g WT eEd+ll+ +v++ G g W+t +++ g+ R++k+c++rw +yl
  Zosma12g00480.1 24 GQWTSEEDDLLASYVRREGEGKWRTMPKRAGLLRCGKSCRLRWMNYL 70
                     89*****************************99************97 PP
2Myb_DNA-binding47.44.4e-1581121648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Zosma12g00480.1  81 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 121
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-211472IPR009057Homeodomain-like
PROSITE profilePS5129413.2671870IPR017930Myb domain
SuperFamilySSF466894.3E-2720117IPR009057Homeodomain-like
SMARTSM007176.4E-102272IPR001005SANT/Myb domain
PfamPF002492.3E-142370IPR001005SANT/Myb domain
CDDcd001676.08E-92670No hitNo description
PROSITE profilePS5129424.39771125IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2473125IPR009057Homeodomain-like
SMARTSM007172.7E-1375123IPR001005SANT/Myb domain
CDDcd001671.48E-1181121No hitNo description
PfamPF002497.2E-1481121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MREPLKTGRG RGTPCCSKVG LKTGQWTSEE DDLLASYVRR EGEGKWRTMP KRAGLLRCGK  60
SCRLRWMNYL RPSVKRGQIA PDEEDLILRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNTH  120
LSKKLLKQGI DPRTHMPLLN PTCSNQTASA APSARQEAVA VKEEDTPQQV MSKDIGDDDL  180
DVNFSDDMLS GFLDSLVVDV DVFLRQDLTN INPTETLVSS LPPFEHDEFW EQVVHPSAIT  240
LDVNGDVDDH FGRHSDSQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23211255108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276363.11e-85PREDICTED: transcription repressor MYB5-like
SwissprotQ388506e-78MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0K9PZK50.0A0A0K9PZK5_ZOSMR; Myb domain protein 5
STRINGGSMUA_Achr6P14840_0012e-86(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-77myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]