PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma12g00700.1
Common NameZOSMA_12G00700
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 188aa    MW: 21443.8 Da    PI: 10.3253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma12g00700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-084075844
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     Ed ++ ++v+++G ++W++I + +  gR +kqc  r 
  Zosma12g00700.1 40 EDAKINELVEKYGCKNWSLIEKSIK-GRIGKQCMQRQ 75
                     999999******************9.*******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.77E-838113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-103879IPR009057Homeodomain-like
PROSITE profilePS500906.1683974IPR017877Myb-like domain
PfamPF002491.8E-73974IPR001005SANT/Myb domain
CDDcd001671.55E-64074No hitNo description
PfamPF098112.7E-9132168IPR019191Essential protein Yae1, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDLNQPFNSP TGIHFNHPFN TPTGRISNKL PSQRYLQHKE DAKINELVEK YGCKNWSLIE  60
KSIKGRIGKQ CMQRQQYFNE SKLLKLIWTK LSMTIALQQQ NCVGRNKITC KLHLEQHREN  120
EKRNIKFQTI CYRDGLIAGK EASAQEAFNV GFKESVVVGY KFGLVRGVTS TLYGLPKHVK  180
DKLSGST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PZM51e-137A0A0K9PZM5_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.12e-11myb domain protein 3r-3